1. European Bioinformatics Institute British research center profiles its staff, conferences, publications, and databases. Find location details as well as project synopses. © Copyright European bioinformatics Institute 2002. All Rights and Trademarks Reserved. http://www.ebi.ac.uk/

Database Search for in Nucleotide sequences Protein sequences Protein structures Protein signatures Literature About Funding News Research ... Services Map

2. SIB - Presentation teaching and service activities in the field of bioinformatics, in Switzerland with international collaborations. http://www.isb-sib.ch/

Home The Institute Info Groups ... Teaching - News - Home Swiss - Prot release 41: The latest Swiss-Prot release is now available ... SIB - GENO - PLANTE: GeneBio Launches a Novel Version of Melanie. Geneva Bioinformatics (GeneBio) S.A. has announced the release of Melanie 4 ... Fresh from the oven ! The release of "Bioinformatics for Dummies" ... Basel Computational Biology Conference 2003: Life Sciences Meet IT (April 3-4, 2003) ... Contact us The SIB is an academic not-for-profit foundation established on March 30, 1998 whose mission is to promote research, the development of databanks and computer technologies, teaching and service activities in the field of bioinformatics, in Switzerland with international collaborations. SIB servers: ExPASy proteomics server Swiss node of EMBnet SIB databases: Eukaryotic Promoter Database (EPD) PROSITE Swiss-Prot and TrEMBL SWISS-2DPAGE ... SWISS-3DIMAGE SIB software: Melanie 4 SWISS-MODEL Swiss-PdbViewer SIB partners: Biozentrum, Basel

3. WIS Bioinformatics And Biological Computing . http://bioinfo.weizmann.ac.il/

bioinfo dapsas Weizmann Institute of Science Department of Biological Services and Crown Human Genome Center Positions available in Bioinformatics and Computational Biology Hosting International Center for Cooperation in Bioinformatics network Israeli National Node of the European Molecular Biology network ... Israel National Laboratory for Genome Infrastructure Last modified: document.write(document.lastModified); For questions or suggestions please contact: biological.informatics@weizmann.ac.il

4. The Bioinformatics Resource Click here to go to The bioinformatics Resource http://www.hgmp.mrc.ac.uk/CCP11

What is TBR? TBR is the website of the CCP11project (Collaborative Computational Project 11). CCP11 was established to foster bioinformatics in the UK research community. Its purpose is to facilitate the transfer of knowledge and expertise through conferences, workshops, a newsletter and the use of the world wide web... read more HGMP-RC Training Courses The HGMP-RC creates and teaches courses tailored for wet lab biologists wishing to use computational tools to further their analyses. Designed to offer a general insight into current Bioinformatics, the introductory course brings participants up-to-speed with relevant in silico research tools. The theory behind commonly used algorithms will be explained before participants work through detailed examples using web based, publicly available software. Specialist courses are also offered for, amongst others, phylogeny, linkage and ACeDB read more

5. The Brutlag Bioinformatics Group John Hopkins University searchable collection of genomic mapping data submitted by researchers worldwide. http://motif.stanford.edu/

6. Bioinformatics bioinformatics aims to publish high quality, peerreviewed, original scientific papers and excellent Category Science Biology bioinformatics Publications Journals...... Submit to bioinformatics. ISCB. Careers in bioinformatics. ABOUT THE JOURNAL,SUBSCRIPTIONS, ADVICE TO AUTHORS. EDITORS, ADVERTISING RATES, RELATED LINKS. http://bioinformatics.oupjournals.org/

Print Subscribers - Register here for Free Online Access View Current Issue March 22 2003 The next issue is scheduled for online publication in: April Search for Articles Browse the Archive Email notification of TOCs 2002 ISMB Proceedings ... RELATED LINKS Other Oxford University Press journals that may be of interest: Biostatistics The EMBO Journal Human Molecular Genetics Nucleic Acids Research ... Oxford University Press publishes Bioinformatics assisted by Stanford University Libraries' HighWire Press Online ISSN: 1460-2059

7. RSBS Bioinformatics Group Homepage Group that researches molecular bioinformatics and biodiversity informatics lists its objectives and includes databases and contacts. http://life.anu.edu.au/

Bioinformatics Group Research School of Biological Sciences, GPO Box 475, Canberra, ACT 2601,Australia Homepage See also the Research School of Biological Sciences website. Staff vacancies The Bioinformatics Group was formed in mid-1997. It researches both molecular bioinformatics and biodiversity informatics. Aims of the Bioinformatics Group To advance bioinformatic science by creating To support systematists and other biological scientists through To apply bioinformatics to practical problems of international significance. At present this includes collaborative work with To facilitate taxon-based research through the development and maintenance of biological databases. These include To facilitate the study and conservation of Australian biodiversity Mode of operation In its start-up phase the Bioinformatics Group is relatively small. Much of the Group's current research is done in collaboration with taxonomists, molecular biologists, ecologists, statisticians and computer scientists based elsewhere in the ANU or in other institutions (eg, CSIRO). We achieve synergistic effects by combining our strengths in computational biology with others' strengths in related fields. Postgraduate research As with the remainder of RSBS the Bioinformatics Group as such has no formal role in undergraduate teaching although individual members conduct courses within the Faculties of ANU. The Group offers postgraduate study (PhD by research, honours year BSc) in its areas of expertise.

8. Welcome To BioInform -- The Integrated Informatics News Source Explore a New Yorkbased journal, published every other Monday, focused exclusively on current events in the global bioinformatics community. Oracle Hopes to Strike bioinformatics Gold with Embedded Data-Mining Tools http://www.bioinform.com/

9. Visualisation For Bioinformatics DNA microarray Visualisation Resources, Papers, Articles, Posters and Talks. http://industry.ebi.ac.uk/~alan/VisSupp/

N.B. The recommended URL to access this web page is http://industry.ebi.ac.uk/~alan/VisSupp/ Visualisation for Bioinformatics Details: About the visualisation project at the EBI For other details of visualisation at the EBI, see the homepage of Alan Robinson as well as the web page of large-scale gene expression and microarray links and resources Microarrays: For details of the EBI's work on DNA microarray visualisation - Please see the web pages of Alan Robinson and Alvis Brazma Visualisation Resources: Course material from a workshop on "Visualisation for Bioinformatics" - including the analysis of gene expression and sequence data. The Visualisation Awareness Pages - A meta-index of Web sites. These pages aim to catalogue visualisation sites, applications, techniques and papers that may be of interest to the bioinfomratics and biological community. The start of a collection of visualisation and library components in Java Frontiers in Visualisation and Computer-Human Interaction '97 - A two day event over December 10th and 11th, 1997. This two day conference will provide an outstanding opportunity to hear some of the world's leading speakers in the related areas of computer-human interaction and visualisation. It will also provide an arena for professionals in the biosciences and pharmacology to meet with the leading graphics and interaction experts and to develop new ideas and synergies. Java p53 Mutation Viewer An integrated, modular system based using the widget approach has been developed for the visualisation and dynamic querying of mutation databases. The first prototype uses the

10. Bioinformatics.Org: Welcome To The Bioinformatics Organization! A community focused on the freedom of information as it pertains to the biosciences. http://bioinformatics.org/

Software/Group People Google Not Logged In Login Join BiO (free!) The Organization About Us ... The Development Laboratory Project Hosting Software Map FTP Repository CVS Repository Mailing Lists ... Documentation The Research Laboratory Online Databases EST Clusters Immigrant Genes Leukemia Genes Pancreatic Cancer Genes Online Analysis Tools COMBOSA3D: Molecule Coloring PeCoP: Conserved Positions Savvy: Plasmid Map Drawing SeWeR: Sequence Analysis ... FTP Repository The Classroom Bioinformatics FAQ The Forum BiO News Submit News Archives Subscribe BiO Bulletin Board Mailing List Archives New! Jobs Forum Submit Archives Subscribe New! Bioclusters Mailing List Archives New! Biodevelopers Mailing List Archives Other Resources Calendar News Submit News Archive Subscribe Conference: IEEE InfoVis Stephen C. North - 03/22/03 10:57 Call for Participation IEEE InfoVis 2003 October 19-21, 2003 Seattle, WA http://www.infovis.org/infovis2003 Computer-based information visualization, or "infovis", centers around helping people explore or explain data by designing interactive software that exploits the capabilities of the human perceptual system. The central design challenge in infovis is designing a cognitively useful spatial mapping of a dataset that is not inherently spatial. There are many possible visual encodings, only a fraction of which are helpful for a given task. We draw on the intellectual history of several traditions, including computer graphics, human-computer interaction, cognitive psychology, semiotics, graphic design, statistical graphics, cartography, and art. The synthesis of relevant ideas from these fields with new methodologies and techniques made possible by interactive computation are critical for helping people keep pace with the torrents of data confronting them. One of the few resources increasing faster than the speed of computer hardware is the amount of data to be processed.

11. Bioinfo_glossary.html Terms defined related to gene sequencing, informatics and applied molecular biology, from College of Staten Island, City University of New York (US). About 300 terms. http://www.library.csi.cuny.edu/~davis/Bioinfo_326/bioinfo_glossary.html

Bioinformatics Glossary A B C D E ... Z Accession number An identifier supplied by the curators of the major biological databases upon submission of a novel entry that uniquely identifies that sequence (or other) entry. Active site The amino acid residues at the catalytic site of an enzyme. These residues provide the binding and activation energy needed to place the substrate into its transition state and bridge the energy barrier of the reaction undergoing catalysis Adenine A purine base found in DNA and RNA Agents Independent, autonomous, software modules that can search the Internet for data or content pertinent to a particular application, such as a gene, protein, or biological system. Agricultural biotechnology (AgBio) The application of rDNA technology to agriculturally important plants and organisms. Algorithm A series of steps defining a procedure or formula for solving a problem, that can be coded into a programming language and executed. Bioinformatics algorithms typically are used to process, store, analyze, visualize and make predictions from biological data. Alignment The result of a comparison of two or more gene or protein sequences in order to determine their degree of base or amino acid similarity. Sequence alignments are used to determine the similarity, homology, function or other degree of relatedness between two or more genes or gene products.

12. Bioinformatics -- Archive Of Issues By Date http://bioinformatics.oupjournals.org/contents-by-date.0.shtml

HOME HELP FEEDBACK SUBSCRIPTIONS ... SEARCH Archive of All Online Issues: 1 Apr 1985 - 22 Mar 2003 Current Issue: Recent Issues: March 22 2003 Vol. 19, Num. 5 March 1 2003 Vol. 19, Num. 4 February 12 2003 Vol. 19, Num. 3 January 22 2003 Vol. 19, Num. 2 PDF and Abstracts: 1 Feb 1998 - 22 Mar 2003 Abstracts only: 1 Apr 1985 - 1 Dec 1997 [How to Obtain Older Articles] HOME HELP FEEDBACK ... SEARCH

13. Bioinformatics.Org: Bioinformatics FAQ bioinformatics Frequently Asked Questions. Mail your questions to me, DamianCounsell, and I'll try to bring you answers. Definition of bioinformatics. http://bioinformatics.org/faq/

Software/Group People Google Not Logged In Login Join BiO (free!) The Organization About Us ... The Development Laboratory Project Hosting Software Map FTP Repository CVS Repository Mailing Lists ... Documentation The Research Laboratory Online Databases EST Clusters Immigrant Genes Leukemia Genes Pancreatic Cancer Genes Online Analysis Tools COMBOSA3D: Molecule Coloring PeCoP: Conserved Positions Savvy: Plasmid Map Drawing SeWeR: Sequence Analysis ... FTP Repository The Classroom Bioinformatics FAQ The Forum BiO News Submit News Archives Subscribe BiO Bulletin Board Mailing List Archives New! Jobs Forum Submit Archives Subscribe New! Bioclusters Mailing List Archives New! Biodevelopers Mailing List Archives Other Resources Calendar Bioinformatics Frequently Asked Questions jump straight to detailed contents Mail Please note that I cannot answer individual specific queries. I am not a careers adviser and . I hope, however, that the information here helps with your studies, career and work, and I am happy to tackle questions of general interest to all visitors to the site. I acknowledge the help of many other individuals in creating this part of the Bioinformatics.Org site. If you have contributed and I have forgotten to credit you, please

14. Digital Gene Technologies Home Combines patented genomics technology with advanced bioinformatics to identify and determine anatomical distribution and expression patterns of the genes contained in any cell or tissue sample. http://www.dgt.com/

15. GENBRAIN BIOSYSTEM NETWORK: From Biological Science To Biosystem Science Research and links pertaining to transgenic animals, bioinformatics, genomic intelligence, and artificial biosystems. http://www.BioSysNet.com/

Online Translatate Chinese-English GENBRAIN BIOSYSTEM NETWORK Welcome to GenBrain BioSystem Network ( BioSysNet.com ), the global informatics web for biosystem scientists, engineers and managers to investigate the genomic intelligence and artificial biosystems. This is a world wide network of Biosystem Science Park for cooperation in Science, Technology, Economics and Sociology (STES) of biological, cognitive and computing systems etc. for the world peace and civilization of human being.GenBrain BioSysNet is a bioinformatic network of the (WABSE). Biosystem Science Parks BANGTSEH BIOSYSTEM GLOBAL WEB Microsoft Yahoo AOL A. (World Universities) B. (Bioindustrials) C. D. Research Institute (Life Sciences) E. F. Internet Tool (Search Engineering) G. (BioLogic Journals) H. Artificial Intelligence (Biorobot) I. Software Online (Biosoftware) J. K. Biomedical Library (Electronic Library) L. M. Biosystem Techniques (Research Methods) N. Scientific Career ICSU Who`s Who Nobel Medicine Prize ... Economic Forum Structurity Bulletin BBC - Sci CNN - Tech MSNBC - Sci.

16. Learning Methods For Data Exploration: Research Group Analysis of functional genomics data, Construction of datadependent metrics for focusing data analysis on relevant or important aspects of the data. http://www.cis.hut.fi/projects/mi/

HELSINKI UNIVERSITY OF TECHNOLOGY LABORATORY OF COMPUTER AND INFORMATION SCIENCE NEURAL NETWORKS RESEARCH CENTRE CIS Home NNRC Home Group ... Home LEARNING METHODS FOR DATA EXPLORATION The group studies statistical models that are useful especially for exploratory data analysis, but also more generally in data mining, information visualization, and probabilistic modeling. The methods have close connections to machine learning, neural computation, and computational statistics. Data exploration is the first, data-driven phase of data analysis. Previously unknown dependencies are sought for in the data. The hypotheses discovered in the first phase are then verified in later stages of analysis. Our current focus is on a new approach to data analysis that we call learning metrics . The developed methods are used particularly in bioinformatics applications, but have also been used for information retrieval, analysis of bankruptcy risk, etc. BIOINFORMATICS Analysis of functional genomics data. LEARNING METRICS Construction of data-dependent metrics for focusing data analysis on relevant or important aspects of the data. PROACTIVE INFORMATION RETRIEVAL Models of co-occurrence data and implicit user feedback in information retrieval.

17. Bioinformatics.Org: Welcome To The Bioinformatics Organization! The bioinformatics Organization (bioinformatics.Org) will have a booth at the BioITWorld Conference Expo, March 25-27, http://www.bioinformatics.org/

Software/Group People Google Not Logged In Login Join BiO (free!) The Organization About Us ... The Development Laboratory Project Hosting Software Map FTP Repository CVS Repository Mailing Lists ... Documentation The Research Laboratory Online Databases EST Clusters Immigrant Genes Leukemia Genes Pancreatic Cancer Genes Online Analysis Tools COMBOSA3D: Molecule Coloring PeCoP: Conserved Positions Savvy: Plasmid Map Drawing SeWeR: Sequence Analysis ... FTP Repository The Classroom Bioinformatics FAQ The Forum BiO News Submit News Archives Subscribe BiO Bulletin Board Mailing List Archives New! Jobs Forum Submit Archives Subscribe New! Bioclusters Mailing List Archives New! Biodevelopers Mailing List Archives Other Resources Calendar News Submit News Archive Subscribe Conference: IEEE InfoVis Stephen C. North - 03/22/03 10:57 Call for Participation IEEE InfoVis 2003 October 19-21, 2003 Seattle, WA http://www.infovis.org/infovis2003 Computer-based information visualization, or "infovis", centers around helping people explore or explain data by designing interactive software that exploits the capabilities of the human perceptual system. The central design challenge in infovis is designing a cognitively useful spatial mapping of a dataset that is not inherently spatial. There are many possible visual encodings, only a fraction of which are helpful for a given task. We draw on the intellectual history of several traditions, including computer graphics, human-computer interaction, cognitive psychology, semiotics, graphic design, statistical graphics, cartography, and art. The synthesis of relevant ideas from these fields with new methodologies and techniques made possible by interactive computation are critical for helping people keep pace with the torrents of data confronting them. One of the few resources increasing faster than the speed of computer hardware is the amount of data to be processed.

18. ExPASy - Biochemical Pathways Digitized version of wall charts courtesy Boehringer Mannheim et al, divided into Metabolic Pathways and Cellular and Molecular Processes, maintained by the Swiss Institute of bioinformatics, Geneva, Switzerland. http://www.expasy.ch/cgi-bin/search-biochem-index

ExPASy Home page Site Map Search ExPASy Contact us ENZYME Search Swiss-Prot/TrEMBL Swiss-Prot/TrEMBL (full text) PROSITE SWISS-2DPAGE ENZYME NEWT Taxonomy HAMAP families ExPASy web site for Biochemical Pathways This page gives access to the digitized version of the Roche Applied Science "Biochemical Pathways" wall chart. Please note that the German publishing company Spektrum Akademischer Verlag GmbH, Slevogtstrasse 3-5, 69126 Heidelberg owns the rights for commercial applications of the Biochemical Pathways. If you wish to use any of the information obtained from this site commercially please contact Ms. Ina Schibel at Spektrum Verlag for approval. For enquiries on how to obtain a paper copy of the wall chart, please contact Roche Applied Science directly, and do not email the ExPASy staff. Keyword Search Please enter one or more keyword(s) or partial word(s). For example, you may type Oxoacyl . You will then be given a list of all matching entries of the "Biochemical Pathways" wall chart. If you enter more than one keyword, only the entries matching all keywords will be listed. This list contains links to the ENZYME Database and, for each entry, links to all maps of "Biochemical Pathways" in which this entry appears.

19. Integrative BioInformatics - Home Page Leveraging technology to bridge cell biology and genomics by providing computational biology and database technology software and consulting services for modeling complex biological problems faced by scientists in public and private research institutes, biotechnology companies, and universities. http://www.integrativebioinformatics.com

Leveraging Technology to bridge Cell Biology and Genomics Bioinformatics : Research, development or application of computational tools and approaches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze or visualize such data. Computational Biology : The development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological, behavioral, and social systems. (NIH Biomedical Information Science and Technology Initiative) Science is made up of facts just as a house is built up of stones, but a collection of facts is no more a science than a heap of stones is a house. H. Poincare Our Mission Integrative BioInformatics is a biotech consulting firm with expertise in computational biology and database technology. We specialize in bringing our software solutions to bear on complex biological and data analysis problems faced by scientists in public and private research institutes, biotechnology companies, and universities.

20. UCLA Bioinformatics Main web site for the UCLA bioinformatics program.Category Science Biology bioinformatics Research Groups...... in bioinformatics. bioinformatics is the study of the inherent structureof biological information and biological systems. It brings http://www.bioinformatics.ucla.edu/

Bioinformatics User Lab UCLA Releases 50,000 SNPs in Human Genes Download GeneMine Software April 2002: Applications for NSF IGERT Fellowship Available April 2002: Applications for NSF IGERT Summer Undergraduate Internships in Bioinformatics Bioinformatics is the study of the inherent structure of biological information and biological systems. It brings together the avalanche of systematic biological data (e.g. genomes) with the analytic theory and practical tools of mathematics and computer science. Mission The UCLA Center for Bioinformatics is an interdepartmental faculty group that pursues fundamental research in bioinformatics and allied fields such as genomics and proteomics, and offers a graduate curriculum in bioinformatics. The Center fosters faculty research collaborations, provides graduate training fellowships, and operates a Bioinformatics User Lab for UCLA researchers. The Center is composed of more than 15 faculty laboratories active in bioinformatics research, from the Medical School, Life Sciences, Physical Sciences and Engineering. Faculty Research The faculty of the UCLA Center for Bioinformatics engage in a wide variety of research topics in bioinformatics, genomics and proteomics. The Center includes more than 15 laboratories affiliated with departments such as Chemistry and Biochemistry, Computer Science, Human Genetics, and Statistics. Detailed faculty research descriptions are available at

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